Pigments in aquatic ecosystems

Three main groups of plant pigments occur in phytoplankton: The liposoluble Chlorophylls and Carotenoids, as well as water-soluble Phycobilins. The first two groups are found in all eukaryotic algae and in the prokaryotic Cyanobacteria and Prochlorophytes. The Phycobilins are unique to Cyanobacteria, Crypto- and Rhodophyceae.

All Chlorophylls, Phycobilins and most of the more than 100 Carotenoids have the task of absorbing light for photosynthesis. Some of the Carotenoids act as protecting mechanism of the cells against photo damage.

All pigments, except Chlorophyll-a, are referred to as "accessory" pigments.

The HPLC – system of the department (Fig. 1) is designed to analyze the Chlorophylls and Carotenoids as well as their derivatives. The system detects the pigments by means of their absorption and fluorescence. As result of the analysis one obtains a "chromatogram" on which each of the pigments present in the sample appears as a separate peak (Fig. 2). Characteristic for each pigment are both its "retention time" (the time it takes to elute at the end of the separation column) as well as its absorption spectrum (Fig. 3). By calibration of the system with pure standards the pigments can then be determined both quali - and quantitatively.

Pigments as chemotaxonomic markers

Each taxonomic class of phytoplankton owns its specific pigment composition (Fig. 4). With adequate ratios of Chlorophyll-a to the individual marker pigments and a calculation program (CHEMTAX; developed by MACKEY et al. (1996)) it is possible to calculate the taxonomic composition of a phytoplankton population and to determine the contribution of each class to total Chlorophyll by means of pigment analysis of a water sample. This is especially important for very small phytoplankton species (nano and pico plankton), which are not easily determined by light microscopic methods. Therefore, the microscopic method and the chemotaxonomic pigment HPLC analysis complement each other perfectly (Figure 5). The microscopic group summarized as μ-flagellates could be broken down by their marker pigments as Dinoflagellates, Prasino-, Chryso-, Prasino-, Crypto- and Chlorophyceae.

Pigment measurements of sediment samples provide information on the origin of the sunken material (for example, different trophic regimes etc.). The composition of the pigments in feces of zooplankton may show existing food preferences.